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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14572155_14574392_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14572155 - 14574392
Intron Length:
2238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTAATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATGTCTAATT
Flanking Amino Acid:
LTRASITPILGSPSTKRRGQ
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
74
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73
0.52
1
65.6
45
Minor 5ss
32.2
-2
2.7
39.2
40.5
Minor BPS
49.3
0.02
2
70.54
40.6

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035829
14542464 - 14576622
34159
ENSAPLT00000013833
14542464 - 14576622
34159