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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14574477_14574574_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14574477 - 14574574
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATATTGAATT
Flanking Amino Acid:
ETAHFFEEIKEEEEESDGLS
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78.5
30.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.6
0.71
0.8
77.8
35.6
Minor 5ss
36.7
-1.5
2.5
43
44
Minor BPS
61.1
0.43
1.6
78.83
37.2

Associated Gene:

Gene:
FAM13B
Ensembl Gene ID:
ENSAPLG00000013261
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033422
14542464 - 14576481
34018
ENSAPLT00000013833
14542464 - 14576622
34159
ENSAPLT00000035829
14542464 - 14576622
34159