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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14582375_14583720_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14582375 - 14583720
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AGGCAATTAACA
Flanking Amino Acid:
EIHIKDLVRQSCNKTLVKLR
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
78.9
0.65
0.9
77
37.2
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
48.9
-0
1.8
58.97
39.7

Associated Gene:

Gene:
PKD2L2
Ensembl Gene ID:
ENSAPLG00000012989
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013541
14580635 - 14591906
11272