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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14586162_14587706_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14586162 - 14587706
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGCT
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
CCCCCAGTAAAA
Flanking Amino Acid:
AICVFFAFMKIFKFVNFNKT
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
38.8
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
86.6
0.82
0.8
81.1
30.9
Minor 5ss
38
-1.4
3.6
56.7
47.6
Minor BPS
40.6
-0.7
2.2
46.75
42.8

Associated Gene:

Gene:
PKD2L2
Ensembl Gene ID:
ENSAPLG00000012989
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013541
14580635 - 14591906
11272