About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14587878_14588377_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14587878 - 14588377
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TGCTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTCAGTTTCACT
Flanking Amino Acid:
WNWLDLLLVAVSILAIGFNI
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
83.6
0.76
0.8
81.3
30.8
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
48.5
-0
2.2
71.79
45.5

Associated Gene:

Gene:
PKD2L2
Ensembl Gene ID:
ENSAPLG00000012989
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013541
14580635 - 14591906
11272