About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14588607_14589280_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14588607 - 14589280
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CAGTCCCCAATT
Flanking Amino Acid:
NANLNLFCIIRLVVEFPATG
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
81.3
0.7
0.9
73
41.6
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
49.2
0.02
1.9
66.16
44.5

Associated Gene:

Gene:
PKD2L2
Ensembl Gene ID:
ENSAPLG00000012989
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013541
14580635 - 14591906
11272