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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14589503_14590340_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14589503 - 14590340
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
CTGTTTCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCTCATAG
Flanking Amino Acid:
KSDFGLKNGSEWKYTSATSL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
76.9
0.6
0.8
72.5
32.4
Minor 5ss
37.2
-1.5
3
46.8
42.6
Minor BPS
47.6
-0.3
1.9
57.53
43.7

Associated Gene:

Gene:
PKD2L2
Ensembl Gene ID:
ENSAPLG00000012989
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013541
14580635 - 14591906
11272