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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14590598_14591778_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14590598 - 14591778
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AAATCTTTAACC
Flanking Amino Acid:
SIRNVDDFWKFAEGPLLDGL
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
76.2
39.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
71.6
0.49
0.9
66.1
39.1
Minor 5ss
38.4
-1.3
3.6
56.8
41.8
Minor BPS
76.2
0.8
1.1
75.14
34.6

Associated Gene:

Gene:
PKD2L2
Ensembl Gene ID:
ENSAPLG00000012989
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013541
14580635 - 14591906
11272