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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14597522_14597991_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14597522 - 14597991
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCCTCTTTAATT
Flanking Amino Acid:
ASFAVKVEVIAKEHHTPPTF
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.3
41.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.1
0.57
0.9
74.5
34
Minor 5ss
31.4
-2.1
3.1
36.3
41.6
Minor BPS
77.5
0.94
1.1
82.98
39.3

Associated Gene:

Gene:
MYOT
Ensembl Gene ID:
ENSAPLG00000012838
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013384
14589966 - 14607982
18017