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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14598200_14599351_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14598200 - 14599351
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATACCA
5'SS Class:
major
3'SS Sequence:
CTTCCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGCTTTTTAACT
Flanking Amino Acid:
EGRFCRLDFKVSGLPTPDVM
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
60.9
37.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.1
0.7
0.7
75.4
26.6
Minor 5ss
34
-1.8
3.1
41.2
38.7
Minor BPS
71.7
0.76
1.2
78.3
38.2

Associated Gene:

Gene:
MYOT
Ensembl Gene ID:
ENSAPLG00000012838
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013384
14589966 - 14607982
18017