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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14599485_14600011_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14599485 - 14600011
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTCACACAACC
Flanking Amino Acid:
IRLQVPTTHVRSRPSSRGDE
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
77.7
0.69
1
81
30.2
Major PPT
72.1
0.5
0.9
69.2
37
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
49.6
-0
2
70.97
39.3

Associated Gene:

Gene:
MYOT
Ensembl Gene ID:
ENSAPLG00000012838
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013384
14589966 - 14607982
18017