About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14676537_14683715_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14676537 - 14683715
Intron Length:
7179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAC
U12 Branch Point Sequence:
AACTTTCTACTT
Flanking Amino Acid:
MEEESIKQSSRSSE
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
58.6
0.21
1
65
28.4
Major PPT
82.1
0.72
0.8
79.5
32.5
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
45
-0.3
1.8
59.02
39

Associated Gene:

Gene:
KLHL3
Ensembl Gene ID:
ENSAPLG00000000978
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001242
14676523 - 14717547
41025