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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14683610_14683715_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14683610 - 14683715
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATAACT
5'SS Class:
major
3'SS Sequence:
TCCCTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAC
U12 Branch Point Sequence:
AACTTTCTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
73.8
34.7
Major BPS
58.6
0.21
1
65
28.4
Major PPT
82.1
0.72
0.8
79.5
32.5
Minor 5ss
37.9
-1.4
3
51.5
38.7
Minor BPS
45
-0.3
1.8
59.02
39

Associated Gene:

Gene:
KLHL3
Ensembl Gene ID:
ENSAPLG00000000978
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026148
14683353 - 14717547
34195