About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14691738_14698998_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14691738 - 14698998
Intron Length:
7261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
CTGTTGCTATCT
Flanking Amino Acid:
EIEVTEENVQVLLPAASLLQ
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
81.1
0.7
0.9
72.6
42.4
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
42.2
-0.5
2.4
63.45
47

Associated Gene:

Gene:
KLHL3
Ensembl Gene ID:
ENSAPLG00000000978
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026148
14683353 - 14717547
34195
ENSAPLT00000026028
14682898 - 14716920
34023
ENSAPLT00000001242
14676523 - 14717547
41025