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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14707079_14708046_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14707079 - 14708046
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCATGTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTAACTTTAAAT
Flanking Amino Acid:
PLLPRDYLVQTVEEEALIKN
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
73.9
42.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72
0.5
1
68.5
42
Minor 5ss
34.2
-1.8
2.8
41.7
44.8
Minor BPS
70.7
0.73
1.4
83.2
37.2

Associated Gene:

Gene:
KLHL3
Ensembl Gene ID:
ENSAPLG00000000978
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026148
14683353 - 14717547
34195
ENSAPLT00000026028
14682898 - 14716920
34023
ENSAPLT00000001242
14676523 - 14717547
41025