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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14716713_14716891_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14716713 - 14716891
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAGT
5'SS Class:
major
3'SS Sequence:
CCCCTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
TGCCCCTTAAAA
Flanking Amino Acid:
TSMSTGRSYAGVAVIHKPL*
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.3
40.7
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
62.7
0.29
1
58.2
34.9
Minor 5ss
35.7
-1.6
3.1
51.7
44.8
Minor BPS
67.7
0.55
1.4
71.33
40.1

Associated Gene:

Gene:
KLHL3
Ensembl Gene ID:
ENSAPLG00000000978
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026148
14683353 - 14717547
34195
ENSAPLT00000026028
14682898 - 14716920
34023
ENSAPLT00000001242
14676523 - 14717547
41025