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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14784462_14789150_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14784462 - 14789150
Intron Length:
4689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATACCTTATAT
Flanking Amino Acid:
QKLSRGKSLLGAFIPRCNEE
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.3
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.9
0.67
0.9
78.4
39.4
Minor 5ss
40.1
-1.1
2.7
42.5
44.2
Minor BPS
62.4
0.47
1.8
79.81
41.4

Associated Gene:

Gene:
SPOCK1
Ensembl Gene ID:
ENSAPLG00000002554
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002565
14782111 - 15063055
280945