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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14790028_14796620_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14790028 - 14796620
Intron Length:
6593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TGGTATTCAGCT
Flanking Amino Acid:
KPTSSETAQGRFDTSILPIC
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
86.2
0.81
0.8
80.9
31.1
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
47
-0.1
1.9
66.1
44.3

Associated Gene:

Gene:
SPOCK1
Ensembl Gene ID:
ENSAPLG00000002554
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002565
14782111 - 15063055
280945