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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14841485_14874234_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14841485 - 14874234
Intron Length:
32750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATGATTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATGATT
Flanking Amino Acid:
GSDGHTYTTKCKLEFHACTS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.4
0.66
0.9
70.2
44.6
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
62.2
0.47
1.5
82.94
31.9

Associated Gene:

Gene:
SPOCK1
Ensembl Gene ID:
ENSAPLG00000002554
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002565
14782111 - 15063055
280945