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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14899243_14967963_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14899243 - 14967963
Intron Length:
68721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCGAT
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
NWNPNKPFDQALDPSKDPCL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
73.7
0.59
1.3
72.5
43.5
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
SPOCK1
Ensembl Gene ID:
ENSAPLG00000002554
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002565
14782111 - 15063055
280945