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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1495687_1496624_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1495687 - 1496624
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCGGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TCTTCGCGATCA
Flanking Amino Acid:
YDIRLRPDFGGPPVAVGMNI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
68.9
0.47
1
75
30
Major PPT
76.1
0.59
1
68.8
41.9
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
41.7
-0.6
2.5
60.79
45

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037347
1337553 - 1497996
160444
ENSAPLT00000029832
1339234 - 1497996
158763
ENSAPLT00000022851
1339234 - 1497996
158763
ENSAPLT00000045901
1337553 - 1497996
160444
ENSAPLT00000041017
1339234 - 1574652
235419