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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1496717_1496839_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1496717 - 1496839
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGATGTATGATT
Flanking Amino Acid:
PLIIAVVCAQSVNDPSNMSL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
68
0.45
1
57.8
39
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
46
-0.2
2
65.02
39.9

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037347
1337553 - 1497996
160444
ENSAPLT00000029832
1339234 - 1497996
158763
ENSAPLT00000022851
1339234 - 1497996
158763
ENSAPLT00000045901
1337553 - 1497996
160444
ENSAPLT00000041017
1339234 - 1574652
235419