About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_14968010_15062887_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14968010 - 15062887
Intron Length:
94878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTTTCCCTGAGT
Flanking Amino Acid:
RDKYWNKFRDDDYFRNWNPN
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
78.9
0.65
0.8
78
29.6
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
64.7
0.55
2
88.28
36.8

Associated Gene:

Gene:
SPOCK1
Ensembl Gene ID:
ENSAPLG00000002554
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002565
14782111 - 15063055
280945