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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1497782_1497878_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1497782 - 1497878
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTCCCCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
71.8
0.49
0.8
69.8
31
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
39.8
-0.6
3.6
74.97
42.5

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022851
1339234 - 1497996
158763