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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1497997_1574250_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1497997 - 1574250
Intron Length:
76254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTCCTTTTCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.9
0.69
0.8
80.4
31.6
Minor 5ss
34.4
-1.8
2.9
47
41.7
Minor BPS
44.9
-0.3
3.6
75.7
46.9

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041017
1339234 - 1574652
235419