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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15090533_15107259_R

Intron Information:

Intron Rank:
138439
Intron Class:
major
Intron Phase:
Intron Coordinates:
15090533 - 15107259
Intron Length:
16727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
TCTGCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
AAAGCAATAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
77.5
0.62
0.8
69.7
36.7
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
41.6
-0.7
1.9
44.03
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022005
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034388
15089675 - 15153381
63707