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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15107335_15152428_R

Intron Information:

Intron Rank:
138440
Intron Class:
major
Intron Phase:
Intron Coordinates:
15107335 - 15152428
Intron Length:
45094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTATTTTTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.7
0.71
0.8
73
37
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
57.4
0.09
1.6
62.98
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022005
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034388
15089675 - 15153381
63707