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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15153294_15155861_F

Intron Information:

Intron Rank:
132655
Intron Class:
major
Intron Phase:
Intron Coordinates:
15153294 - 15155861
Intron Length:
2568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTTTTCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.8
43.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
44.3
-0.6
2.7
56.9
47.4
Minor BPS
59.7
0.3
1.6
70.85
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021287
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019699
15152149 - 15156891
4743