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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_151820_154962_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151820 - 154962
Intron Length:
3143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AAATTTGTAATT
Flanking Amino Acid:
SINAHLGIEQSRRDDMESLG
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
88
0.85
0.7
83.2
25.3
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
49.8
0.07
1.9
67.51
37.8

Associated Gene:

Gene:
CSNK1A1
Ensembl Gene ID:
ENSAPLG00000010571
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011075
148311 - 175805
27495