Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15197261_15225272_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15197261 - 15225272

Intron Length:

28012

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTGC

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

ATAAAACCAACA

Flanking Amino Acid:

MQVRSRLRNTNYKNM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

73.2

39.3

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

86.2

0.82

0.7

81.2

30.8

Minor 5ss

46.1

-0.4

2.6

62.1

42.6

Minor BPS

39.3

-0.8

51.79

38.4

Associated Gene:

Gene:

TRPC7

Ensembl Gene ID:

ENSAPLG00000002677

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021897

15197244 - 15287046

89803

ENSAPLT00000002732

15197244 - 15287046

89803

ENSAPLT00000041656

15197244 - 15287046

89803