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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15220112_15225272_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15220112 - 15225272
Intron Length:
5161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
TGTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAA
U12 Branch Point Sequence:
ATAAAACCAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.7
Major BPS
56.5
0.16
0.9
63.3
29.1
Major PPT
86.2
0.82
0.7
81.2
30.8
Minor 5ss
38.6
-1.3
3
41.3
45.2
Minor BPS
39.3
-0.8
2
51.79
38.4

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030094
15220032 - 15287046
67015