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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15257139_15261420_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15257139 - 15261420
Intron Length:
4282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACT
5'SS Class:
major
3'SS Sequence:
CATTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTACATTTCATT
Flanking Amino Acid:
IAYWIAPCSKLGRTLRSPFM
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.6
38.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
78.2
34.5
Minor 5ss
34.4
-1.8
3.3
50.3
45.7
Minor BPS
46.6
-0.1
1.9
63.98
40.4

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030094
15220032 - 15287046
67015
ENSAPLT00000021897
15197244 - 15287046
89803
ENSAPLT00000002732
15197244 - 15287046
89803
ENSAPLT00000044088
15218360 - 15287046
68687
ENSAPLT00000041656
15197244 - 15287046
89803