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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15267197_15269096_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15267197 - 15269096
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACTA
Flanking Amino Acid:
LPPEVAYFTYARNKWLPSDP
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
0.9
73.6
41.7
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
65.3
0.48
1.9
80.44
35.6

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030094
15220032 - 15287046
67015
ENSAPLT00000021897
15197244 - 15287046
89803
ENSAPLT00000002732
15197244 - 15287046
89803
ENSAPLT00000044088
15218360 - 15287046
68687
ENSAPLT00000041656
15197244 - 15287046
89803