About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15275887_15278595_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15275887 - 15278595
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATTATGTATTT
Flanking Amino Acid:
MINNSYQEIEEDADVEWKFA
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.4
0.41
1
67.3
32.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
43.8
-0.3
2.2
64.1
40.8

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002732
15197244 - 15287046
89803
ENSAPLT00000044088
15218360 - 15287046
68687
ENSAPLT00000041656
15197244 - 15287046
89803
ENSAPLT00000030094
15220032 - 15287046
67015
ENSAPLT00000021897
15197244 - 15287046
89803