About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15278818_15281532_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15278818 - 15281532
Intron Length:
2715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TTTATAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTTTATAATT
Flanking Amino Acid:
EMGMLNSKQRKVRFQSSTRN
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.2
0.72
0.9
79
38.3
Minor 5ss
46.2
-0.4
2.5
52.5
44.7
Minor BPS
64.2
0.52
1.5
80.97
34.8

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002732
15197244 - 15287046
89803
ENSAPLT00000044088
15218360 - 15287046
68687
ENSAPLT00000041656
15197244 - 15287046
89803
ENSAPLT00000030094
15220032 - 15287046
67015