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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15278818_15283644_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15278818 - 15283644
Intron Length:
4827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
TATGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTCCCCAAACA
Flanking Amino Acid:
EMGMLNSKQRVATLPPSGFY
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
77.8
0.63
0.9
69.8
41.2
Minor 5ss
46.2
-0.4
2.5
52.5
44.7
Minor BPS
58.8
0.27
2
77.88
38.5

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021897
15197244 - 15287046
89803