About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15281614_15283644_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15281614 - 15283644
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTCCCCAAACA
Flanking Amino Acid:
NAYNKPTRYQVATLPPSGFY
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
77.8
0.63
0.9
69.8
41.2
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
58.8
0.27
2
77.88
38.5

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030094
15220032 - 15287046
67015
ENSAPLT00000044088
15218360 - 15287046
68687
ENSAPLT00000041656
15197244 - 15287046
89803