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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15281614_15285474_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15281614 - 15285474
Intron Length:
3861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
CTCATGTTAAGA
Flanking Amino Acid:
NAYNKPTRYQKIMKRLIKRY
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
87.2
0.84
0.7
84.7
30.2
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
44.4
-0.4
2.3
54.58
44.7

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002732
15197244 - 15287046
89803