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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15283699_15285474_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15283699 - 15285474
Intron Length:
1776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTACGTGCA
5'SS Class:
weak_major
3'SS Sequence:
GTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
CTCATGTTAAGA
Flanking Amino Acid:
FYYLGHLQHTKIMKRLIKRY
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.4
57.4
42
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
87.2
0.84
0.7
84.7
30.2
Minor 5ss
33.8
-1.8
3.3
45.3
43
Minor BPS
44.4
-0.4
2.3
54.58
44.7

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041656
15197244 - 15287046
89803
ENSAPLT00000030094
15220032 - 15287046
67015
ENSAPLT00000021897
15197244 - 15287046
89803
ENSAPLT00000044088
15218360 - 15287046
68687