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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15285551_15286290_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15285551 - 15286290
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATATTGCTAACA
Flanking Amino Acid:
VDRENDEVNEGELKEIKQDI
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.7
0.67
0.7
78
24
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
48.5
-0.1
2.3
67.05
39.1

Associated Gene:

Gene:
TRPC7
Ensembl Gene ID:
ENSAPLG00000002677
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030094
15220032 - 15287046
67015
ENSAPLT00000021897
15197244 - 15287046
89803
ENSAPLT00000002732
15197244 - 15287046
89803
ENSAPLT00000044088
15218360 - 15287046
68687
ENSAPLT00000041656
15197244 - 15287046
89803