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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15349328_15349696_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15349328 - 15349696
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACTTACA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TTAACTGGAAAT
Flanking Amino Acid:
LHGPLQWLDKGQEL*
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
67.4
37.7
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
82.8
0.74
0.7
78.3
30.6
Minor 5ss
36.7
-1.5
2.9
43.4
37.7
Minor BPS
45.5
-0.2
2.2
67.95
42.4

Associated Gene:

Gene:
SMAD5
Ensembl Gene ID:
ENSAPLG00000003593
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003717
15349313 - 15378584
29272