Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15354012_15354656_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15354012 - 15354656

Intron Length:

645

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTTAT

U12 Branch Point Sequence:

TTTTGCTTATTT

Flanking Amino Acid:

PQIMPNISTRDVQPVAYEEP

Intron Amino Acid Position:

259

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

29.3

Major BPS

76.3

0.65

67.3

39.3

Major PPT

83.7

0.76

0.8

81.1

35.6

Minor 5ss

41.9

-0.9

2.9

58.7

45.8

Minor BPS

65.7

0.57

87.57

38.6

Associated Gene:

Gene:

SMAD5

Ensembl Gene ID:

ENSAPLG00000003593

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038115

15349646 - 15378584

28939

ENSAPLT00000003717

15349313 - 15378584

29272