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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15358067_15378072_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15358067 - 15378072
Intron Length:
20006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATCTTCTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.7
0.53
0.9
70.2
34.5
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
76.2
0.82
1.1
76.94
34.3

Associated Gene:

Gene:
SMAD5
Ensembl Gene ID:
ENSAPLG00000003593
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038115
15349646 - 15378584
28939
ENSAPLT00000003717
15349313 - 15378584
29272