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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1542324_1542539_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1542324 - 1542539
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGGGG
5'SS Class:
major
3'SS Sequence:
CGGTGTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCGAG
U12 Branch Point Sequence:
CACCCCCGAGCC
Flanking Amino Acid:
YDNRLRPGFGGAVTEVKTDI
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
52.2
44.9
Major BPS
38.1
-0.7
1.4
29.4
34.2
Major PPT
69.5
0.44
1
61.2
40.2
Minor 5ss
26.9
-2.7
3.7
37.8
47
Minor BPS
41.3
-0.6
1.9
46.99
41.5

Associated Gene:

Gene:
GABRA6
Ensembl Gene ID:
ENSAPLG00000013172
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013760
1541938 - 1560962
19025