About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1544270_1544844_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1544270 - 1544844
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TACCCTAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTACCCTAACT
Flanking Amino Acid:
GHACPLKFGSYAYPKSEIIY
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
78.6
0.71
1
78.6
31
Major PPT
65.4
0.35
0.9
62.8
37
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
75.6
0.88
1.7
94.09
32.9

Associated Gene:

Gene:
GABRA6
Ensembl Gene ID:
ENSAPLG00000013172
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013760
1541938 - 1560962
19025