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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1544989_1545661_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1544989 - 1545661
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCGTTCATCATT
Flanking Amino Acid:
VSSETIKSNTGEYSLQLLYF
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.9
81.2
36.5
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
48.1
-0
2
67.62
44

Associated Gene:

Gene:
GABRA6
Ensembl Gene ID:
ENSAPLG00000013172
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013760
1541938 - 1560962
19025