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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15463489_15464719_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15463489 - 15464719
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTGCCTTTCACC
Flanking Amino Acid:
ALILLIAISSVAAGQWGNIC
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
87
0.83
0.6
80.7
31.3
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
54
0.11
1.8
63.04
42.9

Associated Gene:

Gene:
LECT2
Ensembl Gene ID:
ENSAPLG00000030584
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041266
15462620 - 15466752
4133