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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15464817_15465020_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15464817 - 15465020
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGGGCT
5'SS Class:
major
3'SS Sequence:
TGCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGCTTGTTTATG
Flanking Amino Acid:
QHGCGRYNAPRGRRTHKGVD
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
63.5
39.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.2
0.72
0.8
76.8
31.9
Minor 5ss
33.4
-1.9
3.5
48
47.6
Minor BPS
44.1
-0.6
2.3
50.89
43.8

Associated Gene:

Gene:
LECT2
Ensembl Gene ID:
ENSAPLG00000030584
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041266
15462620 - 15466752
4133