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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15470290_15470902_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15470290 - 15470902
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACATGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
LIALVSVLSAVFAKQLDVYP
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
62.3
0.28
1.1
62
38.3
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005087
15469338 - 15474839
5502