About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_15471081_15472052_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15471081 - 15472052
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCAA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
ACTTGCATAATC
Flanking Amino Acid:
RYGCGNFGASRQGGKGERHA
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
65
42.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
42.7
-0.8
3
56.1
48
Minor BPS
51.4
0.02
2
65.38
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004923
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005087
15469338 - 15474839
5502